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cabinet / series 2026/2 / 1-22 · Hachiman
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Bactaegion collective mission○ local·0/ 478 206candidate families touched·0therapeutic hypotheses posted·0annotations completed
1-22 · common · series 2026/2

Hachiman

HamA/HamB DNA degradation defense

The system that holds the line against almost every phage.

Système à 2 composants (HamA hélicase + HamB nucléase) qui détecte l'infection et dégrade l'ADN phagique. Présent dans ~3 % des génomes bactériens. Mécanisme bien caractérisé, mais sans cible humaine directe identifiée.

Proteins
308
Host
bactéries
Discovery
Doron S., 2018
Mechanism
hélicase + nucléase couplées
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✦ The story

Hachiman was a Japanese Shinto god of war and protector of samurai — a figure of broad-spectrum defense. The anti-phage system that bears his name earns the comparison: it defends against an exceptional diversity of phages across multiple taxonomic families. Its architecture is minimalist — just two proteins, HamA (a helicase ATPase) and HamB (a nuclease) — but this simplicity hides a fascinating question: what does HamA recognize that is conserved across so many different phages? Probably a universal motif of the phage replication cycle, perhaps a replication intermediate or a secondary DNA structure specific to the lytic phase.

Discovered 2018
By Doron, Melamed, Ofir et al. (Weizmann Institute) — characterization Picton et al. 2024 (Nat. Microbiol.)
★ Why we care

Hachiman's "surveillance ATPase + conditional effector" architecture has a direct parallel with human RIG-I / MDA5 (helicase sensors of viral RNA that activate type I interferon). Understanding how HamA recognizes a conserved phage motif would illuminate the design of RIG-I/MDA5 modulators to potentiate innate antiviral immunity.

◇ The detail that lands

The Bernheim 2026 atlas (Pasteur) notes that Hachiman is one of the most understudied anti-phage systems relative to its importance. Present in ~3% of bacterial genomes, but with a tiny published footprint. Open playing field for characterizing a mechanism that works against almost everything.

Sources
  1. Doron S. et al., Systematic discovery of antiphage defense systems in the microbial pangenome, Science 359 (2018). doi:10.1126/science.aar4120
  2. Picton D.M. et al., Hachiman, BREX, and Druantia: three under-studied phage-defense systems, Nat. Microbiol. 9 (2024).
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