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Workshop

Touch the matter.

Wikipedia makes you want to wander article to article. Foldit proved that a well-designed puzzle puts a teenager ahead of an algorithm. Bactaegion's Workshop brings together the gestures through which the community touches bacterial defense proteins: drag, lasso, swipe, slider. No blocking tutorial — you'll know what it was after doing the gesture.

Start here

Thirty seconds for the first aha.

Pick a protein below, drag the sliders, isolate a segment that looks coherent to your eye. You've just sketched a domain — the same operation underlying structural model training. No biology required: your eye sees patterns before your intellect names them.

Catalog of gestures

Eight ways to manipulate the living.

Each gesture has a precedent in the scientific discovery games literature. All eight are now live in V1 or V1-simplified.

b.
live

Annotate domain boundaries

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Drag two sliders on a horizontal sequence to isolate a candidate domain. Simple drag-and-drop, instant visual feedback, local IndexedDB storage. The MVP mechanic from the Gemini engagement report.

g.
live · V1

Operon scroller — spot atypical operons

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A characterized bacterial defense operon scrolls slowly like a punched score. Known genes glow (green sense / amber antisense). Click on a candidate gap (unannotated ORF, adjacent phage fragment) to flag it locally. Yjs CRDT local storage (D5.1 shipped). Live Defense Finder import to come.

c.
live

Correct low-confidence BLAST alignments

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Two sequence ribbons that BLAST aligned poorly. Hover a position, insert or remove a gap. Real-time identity score, match columns in defense green, mismatches in rust. V1 = 2 pre-baked pairs (RdrB↔ADAR1, Cap4↔RNase H1). Live BLAST import + BLOSUM62 matrix to come.

a.
live · V1 simplified

Pocket clustering on 3D structures

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Three V1 targets (Cap4 CBASS, PycTIR Pycsar, RdrB RADAR). Mol* viewer in read-only mode; you declare which residues form a druggable pocket and the basic stats (size, mean hydrophobicity, net charge, AA distribution) update in real time. Interactive Mol* brush + FPocket WASM + cavity volume to come.

f.
live · V1 simplified

Structural superposition of bacterial-human orthologs

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Three bacterial-human pairs characterized 2020–2024 (RdrB↔ADAR1, Cap4↔RNase H1, Viperin↔RSAD2). Side-by-side Mol* viewers, pre-computed RMSD cited from literature, transferability hypothesis explicit. Triplet verdict (accept/reject/uncertain) + free note signed with DID.

d.
live

Mechanism ideation via LLM (BYOK)

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Plug in your own Claude, Gemini, or local Ollama key. Four pre-written prompts (3 CBASS inhibition mechanisms, falsifiability test, human ortholog query, paper summary). The browser calls the engine directly — Bactaegion never sees the key or response. Convert response → CC0 MDX draft signed by DID (D3.6 shipped). Streaming + graphical mind-map to come.

e.
live

Asynchronous peer review

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On each lead page, a peer-review panel with 4 gauges (reproducibility, parsimony, biophysical rigor, in silico feasibility), free comment, three-state verdict (approve/reserve/caution). localStorage + Yjs CRDT (D5.2 shipped). WebRTC provider for multi-peer sync to come (D5.3).

h.
live

Wiki curation / graph maintenance

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On each library family page, an overlay lets you add reading notes, flag a factual inaccuracy, or suggest enrichment. The work of the "gnomes" structurally recognized. B0 workflow: export your contributions via /en/my-contributions/ (DID-signed) then open a GitHub PR. Inline editable overlay to come.

On gamification

Bactaegion does not distract you. No ranking, no XP, no streak. No lootbox, no guilt-tripping notifications. Science doesn't need to be disguised as a casino to become engaging.

What we aim for is Raph Koster's satisfaction: the recognition of a pattern. When your eye catches a repetition the algorithm dismissed as noise, your brain releases its own dopamine — no badge needed. Our job is to design gestures that bring this recognition fast, often, and on real scientific problems.

Attribution flows through Open Badges 3.0 soulbound (W3C VC), non-transferable, ORCID-bridgeable. An attestation attests — it does not rank. A Schlafen Annotator badge is a description, not a rank. The "gnome" work of fixing broken links counts as much as the "hero" work of posting a new lead.