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Bactaegion collective mission○ local·0/ 478 206candidate families touched·0therapeutic hypotheses posted·0annotations completed
Canonical sources

Bactaegion does not duplicate any scientific data. Everything comes from public databases.

★ Curated sources
🔍 Search public databases
Protein domains
📚 Reference bibliography
Wang L. et al., Phosphorothioation of DNA in bacteria, Nat. Chem. Biol. 3 (2007).
Picton D.M. et al., SspE-mediated phosphorothioate defense, mBio 15 (2024).
★ Princeps publication
Zhou Y, Zhang K, He Y, Gao H, Zhong Y (2026). SspE-mediated immune defense: GTP hydrolysis as an allosteric switch coupling phosphorothioate recognition to DNA cleavage. mBio.
1-14 · clear lead · series 2026/2

SspBCDE

DNA phosphorothioate restriction

The system that changes the backbone of its own DNA so it isn't mistaken for the enemy.

Ssp family. It modifies the bacterial DNA backbone (phosphorothioate, a sulfur atom replacing a non-bridging oxygen) to distinguish self from non-self. Discovered in Streptomyces lividans. Expanded in 2024 (Picton et al., mBio).

Proteins
1
Host
bacteria
Discovery
Wang L., 2007
Mechanism
sulfur in DNA backbone
Lead DOI
10.5281/zenodo.···
EXPLORE 1 PROTEINS OPEN THE LIBRARY frame a hypothesis →
Also documented in the V1 library see the full entry →
✦ The story

Imagine you want to tell your own mail apart from spam. One bacterium found a radical solution: chemically modify its entire DNA with phosphorothioate (PT) groups — a sulfur atom replacing an oxygen in the phosphate bond. Its own defense proteins (SspB, SspC, SspD) lay down this signature; and SspE, the GTPase effector carrying an HNH nuclease, cleaves any DNA that does NOT bear this signature. So incoming phage DNA, unmodified, gets chopped up. It's immunity through epigenetics — the bacterium marks "self" in chemical terms, and the effector targets "non-self" by default. Remarkable algorithmic elegance.

Discovered 2007
By Wang, Chen, Yang, Wei, Bao et al. (Shanghai Jiao Tong) — cryo-EM paper 2026 by Zhou et al. (mBio)
★ Why we care

No direct human ortholog, but the "recognize-hydrolyze-activate" paradigm transfers to other allosterically regulated GTPases (dynamins, septins). It is also a beautiful synthetic biology tool: one can engineer bacteria with customized PT-dependent immunity.

◇ The detail that lands

The 2026 cryo-EM (Zhou et al.) showed that SspE forms an asymmetric tetramer in which recognition of the 5'-CPSCA-3' motif by a Y63 residue triggers a cascade: GTP hydrolysis (by R133), allosteric rearrangement, and release of the C-terminal HNH domain for cleavage. Three mutations (Y63A, R133A, N724A) each completely abolish defense. Three breakpoints, therefore three potential inhibition sites.

3D structure · AlphaFold
SspE (Streptomyces) · A0A5J6IM44
open on alphafold.ebi.ac.uk ↗UniProt entry ↗
Model fetched live from AlphaFold-EBI · CC BY 4.0 · structure never stored by Bactaegion
Sources
  1. Wang L. et al., Phosphorothioation of DNA in bacteria, Nat. Chem. Biol. 3 (2007).
  2. Picton D.M. et al., SspE-mediated phosphorothioate defense, mBio 15 (2024).
Open leads on SspBCDE · 1
Allosteric SspE → three druggable sites identified
in progress 3 contrib.